I am a graduate student in the Department of Electrical and Computer Engineering at Seoul National University. My research interests are accelerating applications (e.g., bioinformatics, graph processing) with GPUs.

Publication

PID-Comm: A Fast and Flexible Collective Communication Framework for Commodity Processing-in-DIMMs

Si Ung Noh¹, Junguk Hong¹, Chaemin Lim, Seongyeon Park, Jeehyun Kim, Hanjun Kim, Youngsok Kim, Jinho Lee

International Symposium on Computer Architecture (ISCA) · Jul 2024 · 10.1109/ISCA59077.2024.00027

AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping

Seongyeon Park, Junguk Hong, Jaeyong Song, Hajin Kim, Youngsok Kim, Jinho Lee

ACM Annual Symposium on Principles and Practice of Parallel Programming (PPoPP) · Feb 2024 · 10.1145/3627535.3638474

Paper

Artifact

Top Conf. Bioinfo. Syst. SW

Design and Analysis of a Processing-in-DIMM Join Algorithm: A Case Study with UPMEM DIMMs

Chaemin Lim, Suhyun Lee, Jinwoo Choi, Jounghoo Lee, Seongyeon Park, Hanjun Kim, Jinho Lee, Youngsok Kim

Proceedings of the ACM on Management of Data · Jun 2023 · 10.1145/3589258

Paper

Top Conf. AI/ML Syst. SW

SALoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs

Seongyeon Park, Hajin Kim, Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee, Youngsok Kim, Jinho Lee

2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS) · May 2022 · 10.1109/IPDPS53621.2022.00076

Paper

ArXiv

Top Conf. Syst. SW Bioinfo.

Teaching Experience

Embedded System Design (430.417), Teaching Assistant (Fall 2024)
Programming Methodology (430.211), Teaching Assistant (Spring 2023)
Multi-core and GPU Programming (CSI4119), Teaching Assistant (Spring 2022)